QX Labs
All integrations
Seqera
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Developer

Let agents run your Seqera pipelines for you

QX launches workflows, watches every run, builds containers on demand and flags failures—so your scientists ship results instead of babysitting jobs.

@QX Anything broken in my pipelines overnight?
QX
Two runs failed on the rnaseq pipeline in the aws-prod environment around 2am—both hit an OOM on the STAR alignment step. Want me to pull the Wave build logs and open a ticket?
Seqera
Seqera
Linear
Linear

Stop babysitting pipeline runs, chasing failed jobs, and rebuilding containers by hand. Hand it to an agent.

Run management

Pipelines that launch themselves

Kick off the right pipeline in the right compute environment on a schedule or trigger—parameters validated, names checked, results delivered—without anyone opening the console.

Monitoring

Failures caught before you ask

An agent watches every workflow, spots stalls and errors, pulls the logs that matter, and pings the right engineer with a diagnosis instead of a raw stack trace.

Containers

Wave containers on demand

Ask for a container with the tools you need and the agent submits the Wave build, tracks its status, inspects the image, and hands back a registry path ready to run.

Seqera

Real workflows, built for your team

Build complex workflows in minutes that chain Seqera together with the rest of your stack. Trigger them on specific events, on schedule, or on demand.

Bioinformatics: Launch and track sequencing pipelines automatically

New samplesheet in S3

New samplesheet in S3

Triggered in S3

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Validate sample metadata

Agent step

Metadata complete
Seqera

Pick compute environment & pipeline

in Seqera

Seqera

Launch the workflow run

in Seqera

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Summarise results & QC metrics

Agent step

Post results to #lab-runs

Post results to #lab-runs

Alert via Slack

QX agents can list your pipelines, launch workflows, build Wave containers—and a lot more

LISTList pipelines
LISTList workflow runs
LISTList compute environments
LISTList organizations
CREATEBuild a Wave container
QUERYCheck Wave build status
READPull Wave build logs
QUERYInspect container metadata

+ 6 more actions

About Seqera

Seqera Platform is the command centre for Nextflow, used by life-sciences and data teams to launch, monitor and govern pipelines across on-prem and cloud compute environments. With Wave containers, multi-cloud orchestration and a rich API, it's built for scaling reproducible scientific workflows reliably.

About QX Labs

QX is an AI agent platform that helps you build, run and scale AI across your team in a few clicks. Create agents that connect to your data and 1,000+ apps, building institutional memory that gets sharper every run. Then delegate tasks to them from where you already work—Slack, Teams, WhatsApp or email.

See Seqera working inside your stack

Want an AI co-worker that runs and monitors your pipelines for you? Book a demo call to walk through your setup, or get started for free.

Book a demo